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SRX13885836: Nanopore sequencing of TA lines
1 OXFORD_NANOPORE (MinION) run: 318,209 spots, 1.8G bases, 1.5Gb downloads

Design: DNA was isolated from the overnight culture and enriched for large molecular weight DNA. The DNA was then subjected to Nanopore library preparation and was sequenced on MinION using default parameters for 48 hours.
Submitted by: Duke University
Study: Transposon mobility and genome-wide mutations in Cryptococcus neoformans var. neoformans
show Abstracthide Abstract
During murine infection, transposon mutagenesis is a significant driver of spontaneous mutations in the human fungal pathogen Cryptococcus neoformans var. neoformans. We have shown that mutations caused by transposable element (TE) insertion into reporter genes were dramatically elevated at high temperature (37 versus 30 degrees Celsius) in vitro, suggesting that heat stress stimulates TE mobility. Here, to explore the genome-wide impact of TE mobilization, we generated transposon accumulation lines (TA lines) by in vitro passage of C. neoformans var. neoformans strain XL280 for multiple generations at 30 degrees Celsius or at the host-relevant temperature of 37 degrees Celsius. Utilizing whole genome sequencing, we identified native copies of mobile TEs and mapped multiple de novo insertions in these TA lines.
Sample:
SAMN25228547 • SRS11754371 • All experiments • All runs
Library:
Name: barcode04
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 318,209 spots, 1.8G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR17722987318,2091.8G1.5Gb2023-01-02

ID:
19371993

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